Section: Software and Platforms

Crac – RNA-seq read analysis

Actively maintained.

Software self-assessment: A-4, SO-3, SM-3, EM-3, SDL-4, DA-4, CD-4, MS-4, TPM-3

Software web site: http://crac.gforge.inria.fr/

Objective: CRAC aims at identifying biological variations in RNAs by comparing short reads to a reference genome. It detects point mutations, short indels, splice events, and fusion genes or transcripts.

This library is the result of a collaboration with N. Philippe and T. Commes (IGH laboratory, Montpellier) and É. Rivals (LIRMM laboratory, Montpellier).